Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs72962508 | chr18:33223094 | C/G | 3.23E-5 | 509 | 37.75 | 31.77 | 7.37 | KM Plot |
KIRC | rs72968404 | chr18:33272609 | T/C | 3.49E-5 | 507 | 37.77 | 30.45 | 7.37 | KM Plot |
KIRC | rs73011911 | chr19:14970301 | G/A | 2.63E-7 | 504 | 37.37 | 39.85 | 3.37 | KM Plot |
KIRC | rs73037789 | chr19:43810286 | C/G | 5.81E-12 | 502 | 37.37 | 35.62 | 2.17 | KM Plot |
KIRC | rs73062531 | chr19:56163704 | C/T | 1.92E-8 | 499 | 37.73 | 36.4 | 7.4 | KM Plot |
KIRC | rs7308372 | chr12:29522398 | C/G | 5.58E-9 | 507 | 37.73 | 33.93 | 6.07 | KM Plot |
KIRC | rs7309262 | chr12:26866592 | C/A | 4.78E-5 | 505 | 37.77 | 26.92 | 7.93 | KM Plot |
KIRC | rs7314594 | chr12:29430894 | G/T | 4.35E-9 | 508 | 37.67 | 37.25 | 6.07 | KM Plot |
KIRC | rs73234625 | chr4:16166206 | G/A | 3.94E-8 | 498 | 37.47 | 37.03 | 6.07 | KM Plot |
KIRC | rs73301560 | chr20:45088788 | T/C | 1.47E-11 | 505 | 38.83 | 30.1 | 4.75 | KM Plot |
KIRC | rs73492797 | chr19:7013270 | C/T | 7.95E-5 | 489 | 37.77 | 34.82 | 8.53 | KM Plot |
KIRC | rs73492801 | chr19:7013917 | A/G | 7.47E-5 | 491 | 37.77 | 34.82 | 8.53 | KM Plot |
KIRC | rs73543633 | chr11:71828844 | T/C | 0.000129 | 504 | 36.57 | 44.58 | 10.97 | KM Plot |
KIRC | rs73713531 | chr7:99222379 | C/T | 2.52E-14 | 506 | 37.18 | 41.27 | 1.97 | KM Plot |
KIRC | rs7396726 | chr11:1527781 | A/G | 8.08E-5 | 509 | 5.47 | 37.37 | 37.47 | KM Plot |